Welcome to AtProteome
The AtProteome database comprises the data of the high-density, organ-specific
proteome map for Arabidopsis thaliana (Baerenfaller K. et al., Science, 2008
In this website, all the information about the protein identifications is
shown together with a proteogenomic mapping of the peptides onto the genome,
together with links to other databases.
For finding a protein, click on "Protein Search" and enter the search arguments.
These can either be an ATG number (first 9 characters without the splice information,
e.g. AT2G39730), or a word from the annotation line (e.g. activase). One can also
enter several ATG numbers or several search terms in parallel, separated with space,
comma, or semicolon). In order to retrieve more information about the identification,
click on the protein of interest. Please see the help file
] to get more information and to get an
introduction to the other features of the website.
In January 2011 pep2pro has become available at [pep2pro.ethz.ch
], which represents an
updated and expanded version of the AtProteome database. The datasets available there
comprise amongst others the pep2pro TAIR9 wos dataset combining several large-scale
organ-specific proteome maps (Baerenfaller et al., Integrative Biology, 2011 [Link
a large-scale phosphoproteomics study (Reiland et al., Plant Physiology, 2009 [Link
and a pollen proteome map (Grobei et al., Genome Research, 2009).